We propose a novel “Semantic Deep Learning” method to analyze the electronic health records of real patients. Our previous work as successfully used a hypergraph- based approach in the clinical text notes from Stanford Hospital’s Clinical Data Warehouse (STRIDE). Previous experiments based on ontology (i.e., domain knowledge) annotated electronic health records show that hypergraph mining is successful in finding semantic (i.e., indirect) associations. This proposed method will take the success to the next level by adding the deep learning-based embedding in place of the basic hypergraphs of the previous approaches.
Tag: Bioinformatics
O2-M Ontology-based Deep Learning with Explanation for Human Behavior Prediction
In this project, we will investigate ontology-based deep learning (OBDL) algorithms to predict and explain human behaviors in health domains. The main idea of our algorithms is to consider domain knowledge in the design of deep learning models and utilize domain ontologies for explaining the deep learning models and results.
O1-H Semantic Deep Learning for Electronic Health Records
We propose a novel “Semantic Deep Learning” method to analyze the electronic health records of real patients. Our previous work as successfully used a hypergraph- based approach in the clinical text notes from Stanford Hospital’s Clinical Data Warehouse (STRIDE). Previous experiments based on ontology (i.e., domain knowledge) annotated electronic health records show that hypergraph mining is successful in finding semantic (i.e., indirect) associations. This proposed method will take the success to the next level by adding the deep learning-based embedding in place of the basic hypergraphs of the previous approaches.
O2-M Ontology-based Deep Learning with Explanation for Human Behavior Prediction
In this project, we will investigate ontology-based deep learning (OBDL) algorithms to predict and explain human behaviors in health domains. The main idea of our algorithms is to consider domain knowledge in the design of deep learning models and utilize domain ontologies for explaining the deep learning models and results.
O1-H Semantic Deep Learning for Electronic Health Records
We propose a novel “Semantic Deep Learning” method to analyze the electronic health records of real patients. Our previous work as successfully used a hypergraph- based approach in the clinical text notes from Stanford Hospital’s Clinical Data Warehouse (STRIDE).
O2-M Ontology-based Deep Learning with Explanation for Human Behavior Prediction
The goal of this project is to evaluate contemporary techniques for deep learning model explanations and utilize DL Explanation approach for improving model interpretability.
O1-N Semantic Deep Learning for Electronic Health Records
We propose a novel “Semantic Deep Learning” method to analyze the electronic health records of real patients. Our previous work as successfully used a hypergraph- based approach in the clinical text notes from Stanford Hospital’s Clinical Data Warehouse (STRIDE).
O2-M Ontology-based Deep Learning with Explanation for Human Behavior Prediction
In the second year, we will focus on domain ontology-specific deep learning methods, integrating contemporary deep learning model designs with the existing SMASH healthcare ontology and corresponding data, to structure both model input and potentially output in order to develop meaningful semantic explanations that compare favorably with the state of the art.
O1-N Semantic Deep Learning for Electronic Health Records
The goal of this project is to create a novel “Semantic Deep Mining” method to analyze the electronic health records (EHRs) of real patients.
O7-H Using Machine Learning to Discover How the Brain Works
The goals of this projects are to (1) develop ML/DL tools to understand high-resolution temporal/spatial neurological data and (2) use ML/DL to create/refine brain models (mouse, human) to emulate brain dynamics.